PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003427-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 385aa    MW: 43504.9 Da    PI: 4.6942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003427-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.6e-07199240753
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                    + Er+RR+r+ + +  Lr l+P+      +K++K ++L  A  Y+k 
  NNU_003427-RA 199 ISERNRRKRLSQQLLALRALVPNI-----TKMDKRSVLVDALSYLKG 240
                    57*********************7.....6**************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.182192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-12197260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-7198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.64E-6199239No hitNo description
Gene3DG3DSA:4.10.280.107.4E-9199255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-4199240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
METEVGAFSF QEQNQATLNP RPRYLDMISS WLDQDDIYNP TFPQEVEMLN DPLFQFITSD  60
LESNLFSHPP RPDTDESLVH LHDFDPQPSP ESVQSVDTKL TQNQMLVDVC DAFLDSDYLG  120
LIAPAESQGS IDDHVFQSIM DSTTPTLVDS VEVDTPQPIN TNAVDNATTT EPQPYVEEDD  180
EEATDDDPKP GVPSCKNLIS ERNRRKRLSQ QLLALRALVP NITKMDKRSV LVDALSYLKG  240
IHEEIARLQK GVKQQQQPKT LNNLPETWPD NPTSIPRTRR RGSASNATSR TKPHIIEMET  300
EKMEDRRFIV KITCKGGSGA GGEVLRVMES LGFEITYTSL ERIKPQFIQT TVFFRVRKPV  360
KMTEEKLKNY IASTALKSGL SIQKH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249626.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-15bHLH family protein